Introduction

Aim, learning outcomes, associated files, depedencies, etc.

Data structure

Review of inserting Figures (Ch1 bookdown tutorial)

random photo

random photo

(Haley) Exercise 1: Plotting with ggplot2

(Molly) Exercise 2: Networks

(Paige) Exercise 3: Introduction to phylogenies

Resources

References

(APPENDIX) Appendix

Appendix 1

Citations of all R packages used to generate this report.

library("knitcitations")
cleanbib()
options("citation_format" = "pandoc")
read.bibtex(file = "packages.bib")

[1] E. Paradis, S. Blomberg, B. Bolker, et al. ape: Analyses of Phylogenetics and Evolution. R package version 5.3. 2019. <URL: http://ape-package.ird.fr/>.

[2] E. Paradis and K. Schliep. “ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R”. In: Bioinformatics 35 (2018), pp. 526-528.

[3] R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing. Vienna, Austria, 2020. <URL: https://www.R-project.org/>.

Appendix 2

Version information about R, the operating system (OS) and attached or R loaded packages. This appendix was generated using sessionInfo().

## R version 3.6.3 (2020-02-29)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 14393)
## 
## Matrix products: default
## 
## locale:
## [1] LC_COLLATE=English_United States.1252 
## [2] LC_CTYPE=English_United States.1252   
## [3] LC_MONETARY=English_United States.1252
## [4] LC_NUMERIC=C                          
## [5] LC_TIME=English_United States.1252    
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] knitcitations_1.0.10 ape_5.3             
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_1.0.4        xml2_1.2.5        knitr_1.30        magrittr_1.5     
##  [5] lattice_0.20-38   R6_2.4.1          rlang_0.4.5       bibtex_0.4.2.2   
##  [9] stringr_1.4.0     highr_0.8         httr_1.4.1        plyr_1.8.6       
## [13] tools_3.6.3       parallel_3.6.3    grid_3.6.3        nlme_3.1-144     
## [17] xfun_0.18         htmltools_0.4.0   yaml_2.2.1        digest_0.6.25    
## [21] RefManageR_1.2.12 evaluate_0.14     rmarkdown_2.1     stringi_1.4.6    
## [25] compiler_3.6.3    generics_0.0.2    jsonlite_1.6.1    lubridate_1.7.8